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The Glowing Bear cohort selector, in which already Health-RI (BBMRI & TraIT) and The Hyve have invested, is a modern, open source cohort selection interface, that works on the tranSMART REST API version 2, released with the tranSMART 2017 Server release.
  • Supports time series, samples and cross-study queries!
  • Follow-up development and deployment are secured.
  • Investigating important integrations with partners
    • SmartR, HiDome, Borderline (eTRIKS)
    • Jupyter Hub / Notebook
  • Built on Angular 4
  • Open source: https://github.com/thehyve/glowing-bear
  • Works with tranSMART REST API Version 2 (2017) (planned to support more backends, like i2b2 and OMOP)
  • Public demonstration server at http://glowingbear.thehyve.net, where you can login with demo-user/demo-user.

Contact Ward Weistra for more information.

Abstracted user flow in the Glowing Bear cohort selector

Please find in this Google Drive folder (https://drive.google.com/drive/folders/0B5wMQnYmsJvuWVZqZkZ4YmliVXc?usp=sharing):

  • Presentations describing the concepts and reasoning.
  • The feature matrix comparing it to the transmartApp web interface.
  • Demonstration instructions of how you can evaluate most of the features. Please also note the 'not yet implemented' / 'known issues' list at the bottom.

Issues can be reported on Github at https://github.com/thehyve/glowing-bear/issues.

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