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Overview over all known ETL tools and there capabilities for loading data into the tranSMART database.

Overview of the ETL tools

The tranSMART Project Management Committee has decided to focus our efforts on transmart-batch and tmDataLoader going forward.

Overview of the loading capabilities (state of 18.10.2016)

Data type / ETL tooltransmart-datatMDataLoadertransmart-batchIntegrated Curation Environment (ICE)

SupportHDDSupportHDDSupportHDDSupportHDD
Clinical

Y

- - -

Y

- - -

Y

- - -

Y

- - -

DictionaryY- - -N- - -N- - -N- - -
aCGH / CNV *

Y

Y

Y

Y

Y

Y

N

N

Metabolomics

Y

Y

Y

Y

Y

Y

Y

Y

miRNA

Y

Y

Y

Y

Y

Y

Y

Y

mRNA

Y

Y

Y

Y

Y

Y

Y

Y

Proteomics

Y

Y

Y

Y

Y

Y

Y

Y

RNASeq

Y

Y

Y

Y

Y

Y

Y

Y

SNP

N

N

Y

Y

N

N

Y

Y

VCF

Y

Y

Y

Y

N

N

N

N

* aCGH data is called CNV data in the ETL tool transmart-batch

 Explanation of the table


Columns:

  • Support: The column tells if an import is generally possible
  • HDD: The column tells if an import as an highdimensional data is possible (for explanation of HDD see here: Supported Data Types)

Values:

  • Y: the ETL tool is able to load the specified data
  • N: the ETL tool is NOT able to load the specified data


Further information

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