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Overview over all known ETL tools and there capabilities for loading data into the tranSMART database.

Overview of the ETL tools

The tranSMART Project Management Committee has decided to focus our efforts on transmart-batch and tmDataLoader going forward.

Overview of the loading capabilities (state of 18.10.2016)

Data type / ETL tooltransmart-datatMDataLoadertransmart-batchIntegrated Curation Environment (ICE)

SupportHDDSupportHDDSupportHDDSupportHDD
Clinical

Y

- - -

Y

- - -

Y

- - -

Y

- - -

DictionaryY- - -N- - -N- - -N- - -
aCGH / CNV *

Y

Y

Y

Y

Y

Y

N

N

Metabolomics

Y

Y

Y

Y

Y

Y

Y

Y

miRNA

Y

Y

Y

Y

Y

Y

Y

Y

mRNA

Y

Y

Y

Y

Y

Y

Y

Y

Proteomics

Y

Y

Y

Y

Y

Y

Y

Y

RNASeq

Y

Y

Y

Y

Y

Y

Y

Y

SNP

N

N

Y

Y

N

N

Y

Y

VCF

Y

Y

Y

Y

N

N

N

N

* aCGH data is called CNV data in the ETL tool transmart-batch

Explanation of the table
The Column "Support" shows, if an import is possible.
The Column "HDD" shows, if an import as high dimensional data is possible.
Y = possible
N = not possible
-- = technical not possible

Further information

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