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From a users perspective tranSMART only differs three differend data types, which are visualised in the hierarchical i2b2 tree through different symbols.

Dictionaries

  • Metadata
    • Study, concept, patient metadata
    • Hyperlinks to source data
  • Categorical/ numerical data
    • Clinical / NHTMP
    • Derived imaging data / Biobanking data
  • High dimensional data
    • Gene expression: Micro array / mRNAseq, miRNAseq / qPCR miRNA
    • Copy Number Variation data / Array CGH
    • Small Genomic Variants: SNP, indel – VCF format
    • Peptide or protein quantities
    • Metabolite quantities
  • No labels