Known as the tranSMART 2017 server, core-only or backend release.
Contents:
Child pages:
- Manual installation of glowing bear on CentOS (The Hyve)
- tranSMART Pro 17.1 Project Overview and Resources
The code for the tranSMART 2017 Server release is currently released in beta at https://github.com/transmart-foundation/transmart-core
Installation
- Installation and configuration guide: https://github.com/transmart-foundation/transmart-core#build-and-run.
- A hosted version of the tranSMART Server backend + the transmartApp user interface is available at http://transmart.thehyve.net (login with demo-user/demo-user).
REST API V2
With the tranSMART Pro 17.1 Project Overview and Resources a new version of the tranSMART REST API was created: REST API version 2 (v2). This REST API still allows the same OAuth authorisation and authentication, but includes new calls to query on all the new dimensions, including time series, samples (via modifiers) and cross-study concepts.
- The documentation can be generated from the code at https://github.com/transmart-foundation/transmart-core/blob/master/open-api/README.md.
- A hosted version can be found at http://transmart.thehyve.net/open-api. You can login by clicking Authorize at top-right and logging in to the tranSMART server backend with demo-user/demo-user. After this the API calls on the bottom can be executed, right from the web page.
Please keep in mind the tranSMART App user interface will only work with data loaded without all new dimensions. Please look at [candidate] Glowing Bear for a user interface that does allow use of time series and samples.
Database
- Available for browsing here: https://thehyve.github.io/transmart-core-db-doc/
- This database documentation can be generated with SchemaSpy with the code at: https://github.com/transmart-foundation/transmart-core/tree/master/transmart-data/db-doc.
- Database definition (Data Definition Language): https://github.com/transmart-foundation/transmart-core/tree/master/transmart-data/ddl
- Upgrade scripts from 16.2 to 17.1:
- For differences between i2b2 1.7, tranSMART 16.2 and tranSMART 17.1, download transmart-core repository and open in browser: https://github.com/transmart-foundation/transmart-core/blob/master/transmart-data/db-doc/17.1-table-changes/export.html.
