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Dictionaries

The following pages Below are taken from the original wiki and discuss in detail the various data types that can be loaded into tranSMART.

Loading VCF files with transmart-data

Data Sharing and Loading

  • Metadata
    • Study, concept, patient metadata
    • Hyperlinks to source data
  • Categorical/numerical data
    • Clinical / NHTMP
    • Derived imaging data / Biobanking data
  • High dimensional data
    • Gene expression: Micro array / mRNAseq, miRNAseq / qPCR miRNA
    • Copy Number Variation data / Array CGH
    • Small Genomic Variants: SNP, indel – VCF format
    • Peptide or protein quantities
    • Metabolite quantities