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The platform data file defines the platform and maps metabolites (Biochemical) to metabolites’ HMDB IDs, Pathways and Super Pathways. Biochemical name is the primary identifier. Other information is optional. Only HMDB IDs are accepted at present time. Missing or any other IDs will be replaced by “PRIVATE” in the analysis results output. HMDB ID and HMDB Common Name are loaded as a dictionary. If Pathway data is loaded, it will be available in the HDD drop down filter in the Advanced Workflows. All Metabolites mapped to the selected Pathway will be used in the analysis.


Some lipid metabolites have very long names that exceeds Metabolomics table limit. We recommend using Shorthand Notation for Lipid MetabolitesMetabolomics.