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ARtProject Summary
TranSMART 19.1 includes all the new developments from the project funded by Dell Technologies.
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TranSMART installs R. This requires site administrators to download the latest R release and install from source. Over the life of a tranSMARt tranSMART release teher there can be a number of changes to the behavior of R, with older versions breaking so that it becomes necessary to change tohe the makefile to load a more recent version of R or of one of the packages which we depend on. These can break , or to update the operating system dependencies to laod the deve;oper version of a library that an updated package now depends on. Any of these can break the automated installation of R for tranSMART.
One workaround is to provide a standard R server, perhaps with docker or some more widely supported environment so that all the required versions are available. An alternative is to provide an R mirror with only the release-time versions to support installation.
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Earlier tranSMART versions up to release 1.1 displayed a similar popup but with va;ues values for each of these, and for each of the two subsets, that could be specified by the user. This allowed two identical subsets to be compared using different subsets of the high-dimensional data. Even with expression data split by tissue, sample type and timepoint then dropped together into the data box both subsets currently have to work with the same set of high-dimensional data.
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