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# Note, you may use any text edit, to edit datasetList.txt; herein, we use vi
# this next line will run the install that makes available the vi command used below
sudo apt-get install -y vim
# Note: in the 'cd' command, the assumption is that the Scripts directory
# is in the 'transmart' directory of the current account
# if not, adjust accordingly
cd $HOME/transmart
vi ./Scripts/install-ubuntu18/datasetList.txt |
Once you are in the (vi) editor, you can use the following commands:
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# Note: in the 'cd' command, the assumption is that the Scripts directory # is in the transmart directory of the current account # if not, adjust accordingly cd $HOME/transmart ./Scripts/install-ubuntu/load_datasets.sh sh |
With this, the install is complete (with datasets loaded). Open a browser to http://localhost:8080/transmart/ where you should see the tranSMART Web Application's login page. On the Analyze tab, in the tree-interface on the left, you will see the list of datasets loaded. The default login is admin/admin, and you can change the password of that account at the Admin Page in the interface.
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# Note: in the 'cd' command, the assumption is that the Scripts directory
# is in the transmart directory of the current account
# if not, adjust accordingly
cd $HOME/transmart
cd Scripts/install-ubuntu/checks/
./checkAll.sh 2>&1 2>&1 | tee ~/checks.log |
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Following tools and frameworks are required prior to installing and running TranSMART. These instructions use Ubuntu's apt-get command to install the supporting tools for the subsequent install of tranSMART. We assume that you are installing on a clean Ubuntu OS. To build Ubuntu OS in a VM, see the search for "installing Ubuntu on a VM".
Also, at least in this context, where you are setting up tranSMART for an introduction and exploration, it is a good idea to set up the initial (root) user as the user that will run the application. You can choose the name and password when you do the install, for example the user we use in these instructions is: name = transmart, password = transmart.
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