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These instructions are based on the assumption that you are installing tranSMART version 16.2 on Ubuntu 14.04. They draw heavily on previous versions of the release notes, see the credits section of this document for details.

The instructions come in two flavors (1) instructions for an all-in-one script and (2) more detailed step-by-step instructions. The step-by-step instructions are useful when you need to see what is going on and possibly correct problems. They also will serve as a helpful guide for installation on other platforms.

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Make sure the machine or VM you are installing on is according to the Hardware and OS Requirements as specified above.

Set up a transmart account

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./Scripts/install-ubuntu/InstallTransmart.sh 2>&1 2>&1 | tee ~/install.log

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SimpleLoading
SimpleLoading
Loading datasets

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Review the log file, checks.log, in your home directory. For details see the section, below, on using the web application, towards the end of this document. To restart the needed tool interfaces (after a reboot, for example) see the section, below on Running SOLR, Rserve, and Tomcat.

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Step-by-step Instructions

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The description of loading data is covered on in two separate locations, see the Load Dataset section, above, in the all-in-one instructions, and/or the data loading instructions on the DataCuration page.

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