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Loading data with transmart-batch (Cell Line Use Case dataset)This page describes how to load a very complete set of example cell line data from multiple platforms, using the transmart-batch ETL tool. Data are provided by the CTMM TraIT project.

Loading data using tMDataLoader

tMDataLoader is a command-line data loading interface developed by Clarivate Analytics (Formerly IP&Sciences, Thomson Reuters) (v2.1, May 2015). tMDataLoader Wiki

Loading data with Kettle (Step by step tranSMART ETL Guide)

A guide for clinical and expression data loading from JnJ (May 2015)
Loading data with transmart-data (Cell Line Use Case dataset)This page describes how to load a very complete set of example cell line data from multiple platforms, using the transmart-data ETL tool. Data are provided by the CTMM TraIT project.
Loading data using Integrated Curation Environment (ICE)The ICE is a GUI-based data loading framework developed by Sanofi (v1.4, Jan 2015).
Loading VCF files with transmart-dataHow to load Variant Call Format (VCF) files into tranSMART using transmart-data. If you have your vcf file/files ready, you can also load them with tMDataLoader.
TranSMART Guide for Manual Data DeletingSometimes you may want to delete data and you can do it manually. Or you can use

--delete-study-by-id <delete_id> or --delete-study-by-path <delete_path> tMDataLoader options.

Data Curation StandardsThis page is intended to be a repository of information about strategies used and documents/forms created by tranSMART users to standardize tranSMART data loading.
CTMM TraIT OpenClinica-to-tranSMART ConverterFor those who use OpenClinica to acquire eCRF data, the CTMM TraIT project has developed tools to help transfer data from OpenClinica to tranSMART. This GitHub repository contains the tools and complete documentation.
eTRIKS Standards Starter Packthe eTRIKS project has developed a comprehensive approach to data standards for use with tranSMART. Data harmonisation begins with standards.
Supported Data TypesAn overview of the types of data that tranSMART supports, and details of how to load each.
Curated Data RepositoryThis page contains curated data sets that are ready to load into tranSMART. Check back often to see what's been added.

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