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Welcome to the tranSMART Project wiki

The tranSMART Foundation is a global non-profit organization devoted to realizing the promise of translational biomedical research through development of the tranSMART knowledge management platform.  

This is the tranSMART project wiki.  It has links to information of interest to tranSMART users, developers, contributors, and the entire tranSMART community.  For more information about how the wiki is managed, or to contribute content to the wiki, see the Wiki Policies page.

If you're looking for content from the old wiki that has not been migrated, you can find it at Legacy wiki.

Latest News

 
SmartR HackathonThe Hyve is sponsoring a SmartR Hackathon starting on 19 Jan 2016. The goal is to merge variants of Sascha Herzinger's SmartR plugin into a single codebase that can be included in the tranSMART 16.2 release.
Jan 2016 Community Call

19 Jan 2016, 11:00 EST/16:00 GMT/17:00 CET. Click here to register for the Jan-Sep 2016 community calls - Note: you must re-register for the Dec 2015 through Sep 2016 sessions, even if you have been registered previously.

The main presentation for January's meeting is focused on data:

  1. Welcome
  2. Moving into 2016 
  3. Development update 
  4. 2016 Training Program 
  5. tranSMART-ready data sets (What's available, how to access & load; GEO; GWAS; Testing data)
  6. Community feedback - are there other data sets of interest to, or that can be contributed by, the community?  Please bring your ideas to the call!
Dec 2015 Community Call

Video and slides from December 2015 Community call on Tues 15 Dec 11:00 - 12:00 EST/16:00 - 17:00 GMT. Agenda items include:

  • Development roadmap for 2016
  • Simplified installation process
  • Oncology use cases from the CTMM TraIT project
Development roadmap available1 Dec 2015: Following the 2015 Annual Meeting, the tranSMART Development Roadmap (Nov 2015) is available. The roadmap will be updated on a quarterly basis so check back periodically for the latest updates.
New installation instructions22 Nov 2015: The instructions for installing the current tranSMART Foundation release (v1.2.4, Feb 2015) have been completely rewritten and can be found on the Installing tranSMART page.
All news itemsOld news items can be found here.



General Information

 
tranSMART Foundation Home PageThe Foundation website has more information about the Foundation: its members, governance, and history, as well as information about the tranSMART Marketplace and other information of interest to both potential and current users.

One-page overview of tranSMART

A brief overview of the system and the tranSMART Foundation

2015 Bio-IT World Overview of tranSMART and the tranSMART Foundation

A more detailed overview of tranSMART, from the 2015 Bio-IT World in Boston
LicensingInformation about the licensing applicable to the platform
Use CasesSee how others are using tranSMART to advance their research.
tranSMART in the LiteraturetranSMART in the scientific literature

 

 

Using the Platform

 

tranSMART Features

A high-level list of features

Public Instances

These publicly-available installations, pre-loaded with public data, are an easy way to get your hands on the system and see what it can do.
Installing tranSMARTThere are several options for installing and running tranSMART in your own organization. These pages detail the various options including system requirements and detailed installation procedures.
Curating and Loading data (ETL)These pages contain guidance on how to organize data for loading into tranSMART, and instructions for the loading process itself. You will also find links to curated data sets that you can load into your own instance of tranSMART.

Training and Tutorials

Sign up for monthly online training sessions provided by Foundation members Rancho Biosciences and Thomson Reuters, or browse video tutorials that you can view at your own pace.

System Documentation

User's guides, technical documentation, etc.

Getting Support

Get help when things go wrong.

 

 

Developing the platform

 
Development RoadmapWhat's going on with the development of the platform ?
Developer Policies and ProceduresStart here if you want to contribute to the development of the tranSMART platform.
Developer ToolsLinks to repositories and tools of interest to developers.
Quality AssuranceInformation on how the system is tested, including test scripts, results, etc.
Development instancesThese hosted instances are available for development and testing purposes only.



3C Committees

 
The 3C Committees (Code, Content, Community) are the means by which the tranSMART Foundation governs its activities and allows the community to contribute to the platform.  On these pages you'll find information about the mission, projects, and activities of each of the 3C Committees.  If you want to contribute to tranSMART, this is the place to start !

3C: Code

The mission of the Code Committee is to maintain a thriving community that attracts a diverse group of highly talented software professionals who are empowered to create an open, reliable, useful and expanding Translational Research platform based on a vigorous and sustainable technical strategy.

3C: Content

The mission of the Content Committee is to ensure that the tranSMART platform provides maximum value through the data (and metadata) that it contains as well as the functionality it provides.
3C: CommunityThe mission of the Community Committee is to promote Awareness, Transparency, and Communication among all stakeholders in the tranSMART community.


Legacy wiki

 
Legacy wikiThis wiki is being released along with v1.2.5 of tranSMART, at which time the old wiki will be set to read-only mode, and all new content will be added to this wiki

Space contributors

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