Introduction
These pages provide instructions on how to load data into a tranSMART installation. They also provide guidance on how to curate and organize your data prior to loading.
For a brief video tutorial on how to load data into tranSMART using transmart-batch, click here. Follow this link for tMDataLoader Training video.
| Content | Description |
|---|---|
| Loading data with transmart-batch (Cell Line Use Case dataset) | This page describes how to load a very complete set of example cell line data from multiple platforms, using the transmart-batch ETL mechanism. Data are provided by the CTMM TraIT project. |
| tMDataLoader is a command-line data loading interface developed by Clarivate Analytics (Formerly IP&Sciences, Thomson Reuters) (v2.1, May 2015). tMDataLoader Wiki | |
| A guide for clinical and expression data loading from JnJ (May 2015) | |
| Loading data with transmart-data (Cell Line Use Case dataset) | This page describes how to load a very complete set of example cell line data from multiple platforms, using the transmart-data ETL mechanism. Data are provided by the CTMM TraIT project. |
| Loading data using Integrated Curation Environment (ICE) | The ICE is a GUI-based data loading framework developed by Sanofi (v1.4, Jan 2015). |
| Loading VCF files with transmart-data | How to load Variant Call Format (VCF) files into tranSMART using transmart-data. If you have your vcf files/files ready, you can also load them with tMDataLoader. |
| TranSMART Guide for Manual Data Deleting | Sometimes you may want to delete data and you can do it manually. Or you can use --delete-study-by-id <delete_id> or --delete-study-by-path <delete_path> tMDataLoader options. |
| CTMM TraIT OpenClinica-to-tranSMART Converter | For those who use OpenClinica to acquire eCRF data, the CTMM TraIT project has developed tools to help transfer data from OpenClinica to tranSMART. This GitHub repository contains the tools and complete documentation. |
| eTRIKS Standards Starter Pack | the eTRIKS project has developed a comprehensive approach to data standards for use with tranSMART. Data harmonisation begins with standards. |
| Supported Data Types | An overview of the types of data that tranSMART supports, and details of how to load each. |
| Curated Data Repository | This page contains curated data sets that are ready to load into tranSMART. Check back often to see what's been added. |
