These pages provide instructions on how to load data into a tranSMART installation. They also provide guidance on how to curate and organize your data prior to loading.
|Curated Data Repository||This page contains curated data sets that are ready to load into tranSMART. Check back often to see what's been added.|
|Supported Data Types||An overview of the types of data that tranSMART supports, and details of how to load each.|
|A guide to clinical and expression ETL from JnJ (May 2015)|
|eTRIKS Standards Starter Pack||the eTRIKS project has developed a comprehensive approach to data standards for use with tranSMART. Data harmonisation begins with standards.|
|Integrated Curation Environment (ICE) Guide||The ICE is a GUI-based data loading framework developed by Sanofi (v1.4, Jan 2015).|
|tMDataLoader is a command-line data loading interface developed by Clarivate Analytics (Formerly IP&Sciences, Thomson Reuters) (v2.1, May 2015).|
|Tutorial: How to load the Cell Line Use Case dataset with transmart-batch||This page describes how to load a very complete set of example cell line data from multiple platforms, using the transmart-batch ETL mechanism. Data are provided by the CTMM TraIT project.|
|CTMM TraIT OpenClinica-to-tranSMART Converter||For those who use OpenClinica to acquire eCRF data, the CTMM TraIT project has developed tools to help transfer data from OpenClinica to tranSMART. This GitHub repository contains the tools and complete documentation.|
|Loading VCF files with transmart-data||How to load Variant Call Format (VCF) files into tranSMART|
|TranSMART Guide for Manual Data Deleting||Sometimes you may want to delete data.|
For details on the data loading with the Clarivate Analytics ETL tool, please see tMDataLoader Wiki. The wiki is updated regularly to document ETL updates and new options.